· GETPrime
Gene- or transcript-specific primer design for real-time PCR (Gubelmann et al., Database, 2012)
· PrInSeS
Primer-initiated de novo sequence synthesis for clone identification (cDNA screens), validation, and genomic annotation (indels) (Massouras et al., Nature Methods, 2010)
· ABS
Detection of amplification-biased sites in allele-specific analysis of ChIP-seq data
· TIDY
"Transcription factor-DNA Interaction Detection in Yeast". Software to detect positive interactions in 384-well format in yeast one- and two-hybrid screens (Hens et al., Nature Methods, 2011)